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As Illumina's Clarity LIMS Implementation Partner, we specialize in BaseSpace Clarity LIMS implementations and customizations.
Contact usAs the primary professional services partner for Illumina’s Clarity LIMS, Semaphore Solutions has established itself as the leader in LIMS implementation, integration, and support for Next-Generation Sequencing (NGS) laboratories. Our clients include public health organizations, research institutions, and clinical genomics labs that require a robust, scalable, and highly configurable laboratory information management system.
Many laboratories using Clarity LIMS face challenges customizing workflows, integrating systems, and maintaining performance at scale—especially when operating in regulated environments.
With over a decade of experience as Illumina’s premier Clarity LIMS services provider, Semaphore Solutions has developed proven methodologies and proprietary tools to streamline implementation and support. Our approach includes:
Through our extensive portfolio of Clarity LIMS projects, Semaphore Solutions has consistently delivered: Faster, more efficient implementations that minimize downtime and maximize adoption. Seamless integration with laboratory and enterprise systems, reducing manual data entry and errors. Optimized performance and scalability, ensuring Clarity LIMS can support increasing sample volumes. Long-term support and enhancements that allow labs to evolve their LIMS without disrupting operations.
Through our extensive portfolio of Clarity LIMS projects, Semaphore Solutions has consistently delivered: Faster, more efficient implementations that minimize downtime and maximize adoption. Seamless integration with laboratory and enterprise systems, reducing manual data entry and errors. Optimized performance and scalability, ensuring Clarity LIMS can support increasing sample volumes. Long-term support and enhancements that allow labs to evolve their LIMS without disrupting operations.
Semaphore’s unparalleled experience in Clarity LIMS services comes from years of deep collaboration with Illumina and leading genomics labs worldwide. Our involvement in large-scale projects—including the UK’s 100,000 Genomes Project—has given us unique insight into the challenges of scaling Clarity LIMS for high-throughput, regulated environments.
Unlike generic LIMS consultants, our team has been embedded in every stage of Clarity LIMS evolution—from its earliest implementations to its latest updates. This expertise allows us to:
Semaphore Solutions has supported dozens of laboratories with Clarity LIMS, gaining a unique understanding of the common pain points labs experience during implementation and operation. Key issues include:
Semaphore addresses these issues through a combination of deep product experience (over 60 person-years), proprietary implementation accelerators, and a team that includes former Illumina LIMS engineers. This expertise allows us to deliver customized, compliant, and scalable solutions tailored to each lab’s unique operational context.
Our partnership model allows clients to transition from reactive, ad-hoc support to a fully managed and optimized LIMS ecosystem, aligning their informatics infrastructure with long-term research and clinical goals.
In a landscape where data integrity, workflow automation, and regulatory compliance are mission-critical, having the right informatics partner can make or break a laboratory’s success. Semaphore Solutions is not just a vendor—we are the driving force behind the most successful Clarity LIMS implementations worldwide.
Our proven track record, deep domain expertise, and commitment to innovation allow us to support Clarity LIMS customers with unparalleled efficiency and reliability. Whether it’s a new implementation, a complex integration, or ongoing system optimization, our expertise ensures that laboratories can focus on scientific discovery and patient impact—not software limitations.
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